Project data management/OA-ICC

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This page is under construction (2013-10-16)

Seawater carbonate chemistry with R (seacarb)

4D import window - Config tab

Import measured and seacarb calculated sewater carbonate chemistry in one dataset

  • PI of original data/measured data = author of paper or the person who provided the original data
  • PI of seacarb calculated values = OA-ICC Data Curator
  • Method for seacarb calculation = Calculated using seacarb after Nisumaa et al. (2010) (Method ID 6426)
  • Refer to the seacarb citation (Reference ID 60864), set relation to Further details






4D import window - Details tab
  • Add the date of seacarb calculation as dataset comment. Date must be provided in ISO-format (e.g. 2013-10-16)
  • Give the short explanation of seacarb calculation into the dataset comment: coming up soon, will be written by J.-P. Gattuso and Y. Yang

Example: Edmunds, 2012 http://doi.pangaea.de/10.1594/PANGAEA.820070






Examples of data archiving

1) Data not yet archived

  • Import all (georeferenced) data, combine measured seawater chemistry with seawater carbonate chemistry calculation (Seacarb).
  • If more than one dataset is archived, create a Parent.
  • Add the (paper's) abstract to the parent/single dataset and set the reference relation Supplement to.
  • Set the project OA-ICC (Project ID 4173) in the Supplement to data set, childs do not have a project.

Example: Edmunds et al., 2012 (http://doi.pangaea.de/10.1594/PANGAEA.820323)



2) Data previously published in another database with URI (e.g., BCO-DMO):

Reference URI
  • Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
  • Mirroring also all other (georeferenced) data.
  • If more than one dataset is archived, create a Parent.
  • Add the (paper's) abstract to the parent/single dataset and set the reference relation Supplement to.
  • Set the project OA-ICC (Project ID 4173) in the Supplement to data set, childs do not have a project.
  • Create a reference for the external database link (URI and title, nothing else), and link this reference to all datasets, relation Other version.

Example: Comeau et al., 2012 (http://doi.pangaea.de/10.1594/PANGAEA.820164).



3) Data previously published in another database with DOI (e.g., BODC):

Reference DOI
  • Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
  • Do not archive the other data.
  • Add the (paper's) abstract to the single dataset and set the reference relation suppement to
  • Set the project OA-ICC (Project ID 4173)
  • Create a reference for the external published doi (e.g., BODC) (doi and full citation text), and link this reference as original version in the Pangaea dataset.

Example: Hennige et al., 2013 (http://doi.pangaea.de/10.1594/PANGAEA.820339).



4) Data previously published in Panagea

4D import - References
  • Create a table with measured seawater chemistry and the carbonate chemistry calculation (seacarb). Import this table.
  • Give the following references as related to: paper citation and Pangaea parent dataset (= supplement to dataset).

Give the original dataset as reference with status Original version

No abstract is added, reference is related to, project is OA-ICC (Project ID 4173).

Example: Schalkhausser et al., 2013 (http://doi.pangaea.de/10.1594/PANGAEA.820432).





4D import - References

Go to the original dataset and link to the new carbonate chemistry calculation version as Further detail and with the comment Carbonate chemistry recalculation by seacarb

see Schalkhausser et al., 2013 (http://doi.pangaea.de/10.1594/PANGAEA.789153).

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