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| ''This page is under construction (2013-10-16)''
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| == Seawater carbonate chemistry with R [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)] ==
| | please add here the user-manual for OA-ICC. It would be good if you give an abstract about OA-ICC first. |
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| [[Image:Method_OA.png|thumb|4D Import data set - Config]]
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| [[Import]] measured and seacarb calculated sewater carbonate chemistry in one dataset
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| * [[PI]] of original data/measured data = [[Staff|author]] of paper or the person who provided the original data
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| * [[PI]] of seacarb calculated values = OA-ICC Data [[Curator]]
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| * [[Method]] for seacarb calculation = [http://dx.doi.org/10.5194/essd-2-167-2010 ''Calculated using seacarb after Nisumaa et al. (2010)''] (Method ID 6426)
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| * Refer to the seacarb [[citation]] (Reference ID 60864), set relation to ''Further details''
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| [[Image:Comment_OA.png|thumb|4D Import data set - Details]]
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| * Add the date of seacarb calculation as [[dataset]] [[comment]]. Date must be provided in ISO-format (e.g. 2013-10-16)
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| * Give the short explanation of seacarb calculation into the [[dataset]] [[comment]]: ''In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).''
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| Example: Edmunds, 2012 [http://doi.pangaea.de/10.1594/PANGAEA.820375 doi:10.1594/PANGAEA.820375]
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| == Examples of data archiving ==
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| 1) Data not yet archived
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| * [[Import]] all ([[geocode|georeferenced]]) data, combine measured seawater chemistry with seawater carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)].
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| * If more than one [[dataset]] are archived, create a [[Parent]].
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| * Add the (paper's) abstract to the [[parent]]/single [[dataset]] and set the [[Reference]] relation ''[[supplement|Supplement to]]''.
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| * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) in the ''[[supplement|Supplement to]]'' [[dataset]], [[child]]s do not have a [[project]].
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| Example: Edmunds et al., 2012, [http://doi.pangaea.de/10.1594/PANGAEA.820312 doi:10.1594/PANGAEA.820312]
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| 2) Data previously published in another database with '''URI''' (e.g. [http://www.bco-dmo.org BCO-DMO]):
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| [[Image:Reference_URI.png|thumb|4D Reference example URI]]
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| * [[Import]] measured seawater chemistry combined with seawater carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)].
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| * Mirroring also all other ([[geocode|georeferenced]]) data.
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| * If more than one [[dataset]] is archived, create a [[Parent]].
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| * Add the (paper's) abstract to the [[parent]]/single [[dataset]] and set the [[Reference]] relation ''[[supplement|Supplement to]]''.
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| * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) in the ''[[supplement|Supplement to]]'' [[dataset]], [[child]]s do not have a [[project]].
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| * Create a [[reference]] for the external database link (URI and title, nothing else), and link this reference to all [[dataset]]s, relation ''Other version''.
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| Example: Comeau et al., 2012, [http://doi.pangaea.de/10.1594/PANGAEA.821467 doi:10.1594/PANGAEA.821467].
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| 3) Data previously published in another database with '''[[DOI]]''' (e.g. [http://www.bodc.ac.uk BODC]):
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| [[Image:Reference_DOI.png|thumb|4D Reference example DOI]]
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| * [[Import]] measured seawater chemistry combined with seawater carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)].
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| * Other data, e.g. biological parameters can be archived as mean values.
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| * Add the (paper's) abstract to the [[dataset]] and set the reference relation ''Supplement to''; definition of [http://wiki.pangaea.de/wiki/Supplement supplement]
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| * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173)
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| * Create a [[reference]] for the external published [[DOI|doi]] (e.g. [http://dx.doi.org/10.5285/a931a96d-f08d-4e7d-af30-866f5e3e8fd8 Hennige et al., 2012 BODC]), give full citation information, and link this reference as ''Original version'' in the Pangaea [[dataset]].
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| Example: Hennige et al., 2013, [http://doi.pangaea.de/10.1594/PANGAEA.820339 doi:10.1594/PANGAEA.820339].
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| 4) Data previously published in '''Panagea'''
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| [[Image:References2.png|thumb|4D Import data set - References, new dataset]]
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| * Create a table with measured seawater chemistry and the carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)]. [[Import]] this table.
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| * [[Reference]]s of this dataset:
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| ** Article citation, relation ''Related to''
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| ** Original Pangaea [[parent]] [[dataset]] or a single [[dataset]] which is a [[supplement]] to the article, relation ''Related to''
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| ** Original measured seawater carbonate chemistry dataset, relation ''Original version''
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| *No abstract is added.
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| * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173)
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| Example: Schalkhausser et al., 2013, [http://doi.pangaea.de/10.1594/PANGAEA.820432 doi:10.1594/PANGAEA.820432].
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| [[Image:References3.png|thumb|4D Import data set - References, original dataset]]
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| * Update original measured seawater carbonate chemistry [[dataset]]: link to the new carbonate chemistry calculation version as ''Further detail'' and with the [[comment]] '''Carbonate chemistry recalculation by seacarb'''
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| see Schalkhausser et al., 2013, [http://doi.pangaea.de/10.1594/PANGAEA.789153 doi:10.1594/PANGAEA.789153].
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| == Parameter==
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| * [http://www.pangaea.de/ddi/ParameterEPOCA.tab?retr=/curator/Parameter/ParameterEPOCA_all.retr&conf=/curator/Parameter/ParameterSTD.conf&format=html&title=EPOCA+Parameter+in+use List] of all [[parameter]]s used in EPOCA datasets
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| * [http://www.pangaea.de/ddi/ParameterEPOCA.tab?retr=/curator/Parameter/ParameterEPOCA_OA-ICC_all.retr&conf=/curator/Parameter/ParameterSTD.conf&format=html&title=EPOCA+or+OA-ICC+Parameter+in+use List] of all [[parameter]]s used in EPOCA and OA-ICC datasets
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| == Contact ==
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| Data management
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| * [http://www.obs-vlfr.fr/~gattuso/ ''Jean-Pierre Gattuso''], Observatoire Océanologique, Laboratoire d'Océanographie, Villefranche-sur-mer, France, mailto:gattuso@obs-vlfr.fr
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| * ''Yan Yang'', Data Curator, State Key Lab of Marine Environmental Science (Xiamen University), China, mailto:yangyan@xmu.edu.cn
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| == Links == | | == Links == |
| * [http://www.iaea.org/monaco/page.php?page=2260 Ocean Acidification International Coordination Centre (OA-ICC)] | | * [[Talk:Project data management/OA-ICC Curator-Guide - login required[] |