Project data management/OA-ICC: Difference between revisions
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[[Image:Comment_OA.png|thumb|4D Import data set - Details]] | [[Image:Comment_OA.png|thumb|4D Import data set - Details]] | ||
* Add the date of seacarb calculation as [[dataset]] [[comment]]. Date must be provided in ISO-format (e.g. 2013-10-16) | * Add the date of seacarb calculation as [[dataset]] [[comment]]. Date must be provided in ISO-format (e.g. 2013-10-16) | ||
* Give the short explanation of seacarb calculation into the [[dataset]] [[comment]]: '' | * Give the short explanation of seacarb calculation into the [[dataset]] [[comment]]: ''In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011, http://CRAN.R-project.org/package=seacarb) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010, doi:10.5194/essd-2-167-2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).'' | ||
Example: Edmunds, 2012 [http://doi.pangaea.de/10.1594/PANGAEA.820070 doi:10.1594/PANGAEA.820070] | Example: Edmunds, 2012 [http://doi.pangaea.de/10.1594/PANGAEA.820070 doi:10.1594/PANGAEA.820070] |
Revision as of 2013-10-24T15:07:46
This page is under construction (2013-10-16)
Seawater carbonate chemistry with R (seacarb)
Import measured and seacarb calculated sewater carbonate chemistry in one dataset
- PI of original data/measured data = author of paper or the person who provided the original data
- PI of seacarb calculated values = OA-ICC Data Curator
- Method for seacarb calculation = Calculated using seacarb after Nisumaa et al. (2010) (Method ID 6426)
- Refer to the seacarb citation (Reference ID 60864), set relation to Further details
- Add the date of seacarb calculation as dataset comment. Date must be provided in ISO-format (e.g. 2013-10-16)
- Give the short explanation of seacarb calculation into the dataset comment: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Lavigne and Gattuso, 2011, http://CRAN.R-project.org/package=seacarb) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010, doi:10.5194/essd-2-167-2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI).
Example: Edmunds, 2012 doi:10.1594/PANGAEA.820070
Examples of data archiving
1) Data not yet archived
- Import all (georeferenced) data, combine measured seawater chemistry with seawater carbonate chemistry calculation (seacarb).
- If more than one dataset is archived, create a Parent.
- Add the (paper's) abstract to the parent/single dataset and set the Reference relation Supplement to.
- Set the project OA-ICC (Project ID 4173) in the Supplement to dataset, childs do not have a project.
Example: Edmunds et al., 2012, doi:10.1594/PANGAEA.820323
2) Data previously published in another database with URI (e.g. BCO-DMO):
- Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
- Mirroring also all other (georeferenced) data.
- If more than one dataset is archived, create a Parent.
- Add the (paper's) abstract to the parent/single dataset and set the Reference relation Supplement to.
- Set the project OA-ICC (Project ID 4173) in the Supplement to dataset, childs do not have a project.
- Create a reference for the external database link (URI and title, nothing else), and link this reference to all datasets, relation Other version.
Example: Comeau et al., 2012, doi:10.1594/PANGAEA.820164.
3) Data previously published in another database with DOI (e.g. BODC):
- Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
- Do not archive the other data.
- Add the (paper's) abstract to the dataset and set the reference relation Supplement to; definition of supplement
- Set the project OA-ICC (Project ID 4173)
- Create a reference for the external published doi (e.g. Hennige et al., 2012 BODC), give full citation information, and link this reference as Original version in the Pangaea dataset.
Example: Hennige et al., 2013, doi:10.1594/PANGAEA.820339.
4) Data previously published in Panagea
- Create a table with measured seawater chemistry and the carbonate chemistry calculation (seacarb). Import this table.
- References of this dataset:
- Article citation, relation Related to
- Original Pangaea parent dataset or a single dataset which is a supplement to the article, relation Related to
- Original measured seawater carbonate chemistry dataset, relation Original version
- No abstract is added.
- Set the project OA-ICC (Project ID 4173)
Example: Schalkhausser et al., 2013, doi:10.1594/PANGAEA.820432.
- Update original measured seawater carbonate chemistry dataset: link to the new carbonate chemistry calculation version as Further detail and with the comment Carbonate chemistry recalculation by seacarb
see Schalkhausser et al., 2013, doi:10.1594/PANGAEA.789153.
Contact
Data management
- Jean-Pierre Gattuso, Observatoire Océanologique, Laboratoire d'Océanographie, Villefranche-sur-mer, France, mailto:gattuso@obs-vlfr.fr
- Yan Yang, Data Curator, State Key Lab of Marine Environmental Science (Xiamen University), China, mailto:yangyan@xmu.edu.cn