Project data management/OA-ICC: Difference between revisions
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* Import all (georeferenced) data, combine measured seawater chemistry with seawater carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)]. | * Import all (georeferenced) data, combine measured seawater chemistry with seawater carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)]. | ||
* If more than one dataset is archived, create a [[Parent]]. | * If more than one dataset is archived, create a [[Parent]]. | ||
* Add the (paper's) abstract to the parent/single dataset and set the [[Reference]] relation ''Supplement to''; definition of [ | * Add the (paper's) abstract to the parent/single dataset and set the [[Reference]] relation ''Supplement to''; definition of [[supplement]]. | ||
* Set the project [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) in the ''Supplement to'' data set, [ | * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) in the ''Supplement to'' data set, [[child]]s do not have a project. | ||
Example: Edmunds et al., 2012, [http://doi.pangaea.de/10.1594/PANGAEA.820323 doi:10.1594/PANGAEA.820323] | Example: Edmunds et al., 2012, [http://doi.pangaea.de/10.1594/PANGAEA.820323 doi:10.1594/PANGAEA.820323] | ||
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* Mirroring also all other (georeferenced) data. | * Mirroring also all other (georeferenced) data. | ||
* If more than one dataset is archived, create a [http://wiki.pangaea.de/wiki/Parent Parent]. | * If more than one dataset is archived, create a [http://wiki.pangaea.de/wiki/Parent Parent]. | ||
* Add the (paper's) abstract to the parent/single dataset and set the | * Add the (paper's) abstract to the parent/single dataset and set the [[Reference]] relation ''Supplement to''; definition of [[supplement]]. | ||
* Set the project [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) in the ''Supplement to'' data set, [ | * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) in the ''Supplement to'' data set, [[child]]s do not have a project. | ||
* Create a reference for the external database link (URI and title, nothing else), and link this reference to all datasets, relation ''Other version''. | * Create a [[reference]] for the external database link (URI and title, nothing else), and link this reference to all datasets, relation ''Other version''. | ||
Example: Comeau et al., 2012, [http://doi.pangaea.de/10.1594/PANGAEA.820164 doi:10.1594/PANGAEA.820164]. | Example: Comeau et al., 2012, [http://doi.pangaea.de/10.1594/PANGAEA.820164 doi:10.1594/PANGAEA.820164]. | ||
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3) Data previously published in another database with | 3) Data previously published in another database with '''[[DOI]]''' (e.g. [http://www.bodc.ac.uk BODC]): | ||
[[Image:Reference_DOI.png|thumb|4D Reference example DOI]] | [[Image:Reference_DOI.png|thumb|4D Reference example DOI]] | ||
* Import measured seawater chemistry combined with seawater carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)]. | * Import measured seawater chemistry combined with seawater carbonate chemistry calculation [http://cran.r-project.org/web/packages/seacarb/index.html (seacarb)]. | ||
* Do not archive the other data. | * Do not archive the other data. | ||
* Add the (paper's) abstract to the parent/single dataset and set the reference relation ''Supplement to''; definition of [http://wiki.pangaea.de/wiki/Supplement supplement] | * Add the (paper's) abstract to the parent/single dataset and set the reference relation ''Supplement to''; definition of [http://wiki.pangaea.de/wiki/Supplement supplement] | ||
* Set the project [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) | * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) | ||
* Create a reference for the external published doi (e.g. [http://dx.doi.org/10.5285/a931a96d-f08d-4e7d-af30-866f5e3e8fd8 Hennige et al., 2012 BODC]), give full citation information, and link this reference as ''Original version'' in the Pangaea dataset. | * Create a [[reference]] for the external published doi (e.g. [http://dx.doi.org/10.5285/a931a96d-f08d-4e7d-af30-866f5e3e8fd8 Hennige et al., 2012 BODC]), give full citation information, and link this reference as ''Original version'' in the Pangaea dataset. | ||
Example: Hennige et al., 2013, [http://doi.pangaea.de/10.1594/PANGAEA.820339 doi:10.1594/PANGAEA.820339]. | Example: Hennige et al., 2013, [http://doi.pangaea.de/10.1594/PANGAEA.820339 doi:10.1594/PANGAEA.820339]. | ||
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* References of this dataset: | * References of this dataset: | ||
** Article citation, relation ''Related to'' | ** Article citation, relation ''Related to'' | ||
** Original Pangaea parent dataset or a single data set which is a [http://wiki.pangaea.de/wiki/Supplement supplement] to the article, relation ''Related to'' | ** Original Pangaea [[parent]] dataset or a single data set which is a [http://wiki.pangaea.de/wiki/Supplement supplement] to the article, relation ''Related to'' | ||
** Original measured seawater carbonate chemistry dataset, relation ''Original version'' | ** Original measured seawater carbonate chemistry dataset, relation ''Original version'' | ||
*No abstract is added. | *No abstract is added. | ||
* Set the project [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) | * Set the [[project]] [http://www.iaea.org/monaco/page.php?page=2260 OA-ICC] (Project ID 4173) | ||
Example: Schalkhausser et al., 2013, [http://doi.pangaea.de/10.1594/PANGAEA.820432 doi:10.1594/PANGAEA.820432]. | Example: Schalkhausser et al., 2013, [http://doi.pangaea.de/10.1594/PANGAEA.820432 doi:10.1594/PANGAEA.820432]. |
Revision as of 2013-10-18T07:36:59
This page is under construction (2013-10-16)
Seawater carbonate chemistry with R (seacarb)
Import measured and seacarb calculated sewater carbonate chemistry in one dataset
- PI of original data/measured data = author of paper or the person who provided the original data
- PI of seacarb calculated values = OA-ICC Data Curator
- Method for seacarb calculation = Calculated using seacarb after Nisumaa et al. (2010) (Method ID 6426)
- Refer to the seacarb citation (Reference ID 60864), set relation to Further details
- Add the date of seacarb calculation as dataset comment. Date must be provided in ISO-format (e.g. 2013-10-16)
- Give the short explanation of seacarb calculation into the dataset comment: coming up soon, will be written by J.-P. Gattuso and Y. Yang
Example: Edmunds, 2012 doi:10.1594/PANGAEA.820070
Examples of data archiving
1) Data not yet archived
- Import all (georeferenced) data, combine measured seawater chemistry with seawater carbonate chemistry calculation (seacarb).
- If more than one dataset is archived, create a Parent.
- Add the (paper's) abstract to the parent/single dataset and set the Reference relation Supplement to; definition of supplement.
- Set the project OA-ICC (Project ID 4173) in the Supplement to data set, childs do not have a project.
Example: Edmunds et al., 2012, doi:10.1594/PANGAEA.820323
2) Data previously published in another database with URI (e.g. BCO-DMO):
- Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
- Mirroring also all other (georeferenced) data.
- If more than one dataset is archived, create a Parent.
- Add the (paper's) abstract to the parent/single dataset and set the Reference relation Supplement to; definition of supplement.
- Set the project OA-ICC (Project ID 4173) in the Supplement to data set, childs do not have a project.
- Create a reference for the external database link (URI and title, nothing else), and link this reference to all datasets, relation Other version.
Example: Comeau et al., 2012, doi:10.1594/PANGAEA.820164.
3) Data previously published in another database with DOI (e.g. BODC):
- Import measured seawater chemistry combined with seawater carbonate chemistry calculation (seacarb).
- Do not archive the other data.
- Add the (paper's) abstract to the parent/single dataset and set the reference relation Supplement to; definition of supplement
- Set the project OA-ICC (Project ID 4173)
- Create a reference for the external published doi (e.g. Hennige et al., 2012 BODC), give full citation information, and link this reference as Original version in the Pangaea dataset.
Example: Hennige et al., 2013, doi:10.1594/PANGAEA.820339.
4) Data previously published in Panagea
- Create a table with measured seawater chemistry and the carbonate chemistry calculation (seacarb). Import this table.
- References of this dataset:
- Article citation, relation Related to
- Original Pangaea parent dataset or a single data set which is a supplement to the article, relation Related to
- Original measured seawater carbonate chemistry dataset, relation Original version
- No abstract is added.
- Set the project OA-ICC (Project ID 4173)
Example: Schalkhausser et al., 2013, doi:10.1594/PANGAEA.820432.
- Update original measured seawater carbonate chemistry dataset: link to the new carbonate chemistry calculation version as Further detail and with the comment Carbonate chemistry recalculation by seacarb
see Schalkhausser et al., 2013, doi:10.1594/PANGAEA.789153.