Project data management/OA-ICC

This page is under construction (2013-10-16)

Seawater carbonate chemistry with R (Seacarb)

4D import window - Config tab

Import measured and seacarb calculated sewater carbonate chemistry in one dataset

• PI of original data/measured data = author of paper or the person who provided the original data
• PI of seacarb calculated values = OA-ICC Data Curator
• Method for seacarb calculation = Calculated using seacarb after Nisumaa et al. (2010) (Method ID 6426)

4D import window - Details tab

• Add the date of seacarb calculation as dataset comment. Date must be provided in ISO-format (e.g. 2013-10-16)
• Give the short explanation of seacarb calculation into the dataset comment: coming up soon, will be written by J.-P. Gattuso and Y. Yang
• Refer to the Seacarb-R-Script dataset (Reference ID XXXXX, coming up soon, will be archived by A.-M. Nisumaa)

Examples of data archiving

• Data not yet archived

Import all (georeferenced) data, combine measured seawater chemistry with seawater carbonate chemistry calculation (Seacarb). If more than one dataset is archived, create a Parent. Add the (paper's) abstract to the parent/single dataset and set the publication to suppement to. Add the project OA-ICC (Project ID 4173) to the supplement to dataset, childs do not have a project.

Example: Edmunds et al., 2012 (http://doi.pangaea.de/10.1594/PANGAEA.820323)

• Data previously published in another database with URI (e.g., BCO-DMO):

Import measured seawater chemistry combined with seawater carbonate chemistry calculation (Seacarb). Mirroring also all other (georeferenced) data. If more than one dataset is archived, create a Parent. Add the (paper's) abstract to the parent/single dataset and set the publication to suppement to. Add the project OA-ICC (Project ID 4173) to the supplement to dataset.

Reference URI

Create a reference for the other database link (URI and title, nothing else), and link this reference to all datasets, relation other version.

Example: Comeau et al., 2012 (http://doi.pangaea.de/10.1594/PANGAEA.820164).

• Data previously published in another database with DOI (e.g., BODC):

Import measured seawater chemistry data combined with seawater carbonate chemistry calculation. Do not archive the other data. Add the (paper's) abstract to the single dataset and set the publication to suppement to and add the project OA-ICC (Project ID 4173).

Reference DOI

Create a reference for the first published doi (e.g., BODC) (doi and full citation text), and link this reference as original version in the Pangaea dataset.

Example: Hennige et al., 2013 (http://doi.pangaea.de/10.1594/PANGAEA.820339).

• Data previously published in Panagea

Create a table with measured seawater chemistry and the carbonate chemistry calculation (Seacarb). Import this table.

4D import - References

Give the following references as related to: paper citation and Pangaea parent dataset (= supplement to dataset).

Give the original dataset as reference with status Original version

No abstract is added, reference is related to, project is OA-ICC (Project ID 4173).

Example: Schalkhausser et al., 2013 (http://doi.pangaea.de/10.1594/PANGAEA.820432).

4D import - References

Go to the original dataset and link to the new carbonate chemistry calculation version as Further detail and with the comment Carbonate chemistry recalculation by seacarb

see Schalkhausser et al., 2013 (http://doi.pangaea.de/10.1594/PANGAEA.789153).